PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G206600.1
Common NameB456_002G206600, LOC105785992
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 296aa    MW: 32783.2 Da    PI: 8.3759
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G206600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013170192123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k+F ++  L  H  +H
  Gorai.002G206600.1 170 FECSSCKKVFASHQALGGHWASH 192
                         89*************99999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.027193IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5987198IPR007087Zinc finger, C2H2
PfamPF139125.3E-77195IPR007087Zinc finger, C2H2
SuperFamilySSF576676.64E-77293No hitNo description
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SuperFamilySSF576676.64E-7165192No hitNo description
PfamPF139123.9E-8169193IPR007087Zinc finger, C2H2
SMARTSM003550.58170192IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014170197IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
SMARTSM003556.1225247IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-8225249IPR007087Zinc finger, C2H2
PROSITE profilePS501578.787225252IPR007087Zinc finger, C2H2
PROSITE patternPS000280227247IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MNENIDSDHG FRFLSSVTQH NVTVNYDPKP RKKRTKVVKV DVGQFPTCSS TTVSRPKYTK  60
KPDPAAPKIT RPCTECGKKF WSWKALFGHM RCHPERQWRG INPPPNYCRP VKPASNVETL  120
MTEDDHEIAA SLLMLANGST ASESECGTSY RPGVQETEAF SQHLGTNIRF ECSSCKKVFA  180
SHQALGGHWA SHKNVKGCFA ITRSEGYDVK DHSCDEDKMM MVLGHKCSIC WKLLSSGQAL  240
GGHKRYHWGK GDDEASSLNL LTAKEDCGLD LNLPPAPLQN DSYPSGLALD LRLSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467663.10.0PREDICTED: zinc finger protein ZAT3-like
SwissprotO654991e-79ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A0D2Q9Q50.0A0A0D2Q9Q5_G
STRINGPOPTR_0009s16770.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-77C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]